publicações selecionadas
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artigo académico
- TranSyT, an innovative framework for identifying transport systems. Bioinformatics. 2023
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artigo de conferência
- Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression. AI Communications. 2019
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artigo de revista
- A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation. Biochemical SocIETy Transactions. 2020
- Methods for automated genome-scale metabolic model reconstruction. Biochemical SocIETy Transactions. 2018
- Enabling comparative modeling of closely related genomes: Example genus Brucella. 3 Biotech. 2015
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documento
- TranSyT, the Transport Systems Tracker 2021
- Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 2020
- MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 2020
- Automated reconstruction and comparison of metabolic models for diverse fungal genomes 2018
- Improving automated model reconstruction across phylogenetically diverse genome-scale metabolic models 2018
- Reconciling gene expression data with regulatory network models 2015
- Reconciling gene expression data with regulatory network models – a stimulon-based approach for integrated metabolic and regulatory modeling of Bacillus subtilis 2014
- TranSyT, the Transport Systems Tracker
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teses