publicações selecionadas
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artigo académico
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artigo de conferência
- A health-related study from food online reviews. The case of gluten-free foods. AI Communications. 2021
- Benchmarking biomedical text mining web servers at BioCreative V.5: the technical Interoperability and Performance of annotation Servers - TIPS track 2017
- Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks 2017
- Marky: a lightweight web tracking tool for document annotation. AI Communications. 2014
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artigo de revista
- Boosting biomedical document classification through the use of domain entity recognizers and semantic ontologies for document representation: the case of gluten bibliome. Neurocomputing. 2022
- A framework to extract biomedical knowledge from gluten-related tweets: the case of dietary concerns in digital era. Artificial Intelligence in Medicine. 2021
- Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. Journal of Cheminformatics. 2019
- Using Twitter to understand the human bowel disease community: exploratory analysis of key topics. Journal of Medical Internet Research. 2019
- Online visibility of software-related web sites: The case of biomedical text mining tools. Information Processing & Management. 2019
- Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. Computers in Biology and Medicine. 2019
- Exploring anti-quorum sensing and anti-virulence based strategies to fight Candida albicans infections: an in silico approach. FEMS Yeast Research. 2018
- Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans. Antibiotics. 2018
- A network perspective on antimicrobial peptide combination therapies: The potential of colistin, polymyxin B and nisin. International Journal of Antimicrobial Agents. 2017
- Collaborative relation annotation and quality analysis in Markyt environment. Database. 2017
- Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining. Antibiotics. 2017
- From amino acid sequence to bioactivity: the biomedical potential of antitumor peptides. Protein Science. 2016
- Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Briefings in Bioinformatics. 2016
- Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database. 2016
- Reconstruction of the network of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections. Current Bioinformatics. 2016
- Single molecule simulation of diffusion and enzyme kinetics. ACS Applied Polymer Materials. 2016
- The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. Database. 2016
- Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects. Computer Methods and Programs in Biomedicine. 2015
- Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework. Biomed Research International. 2015
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documento
- The BioCreative V.5 evaluation workshop: tasks, organization, sessions and topics 2017
- Developing timely insights into Pseudomonas aeruginosa quorum sensing therapeutics through text mining 2016
- Developing timely insights into Pseudomonas aeruginosa quorum sensing therapeutics through text mining, 2016
- Insights into Pseudomonas aeruginosa quorum sensing therapeutics through text- and network-mining 2016
- Antimicrobial Combination Database
- PCQuorum Database
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poster de conferência