Publicações no PortAberta

Co-autor de rede

Mapa da Ciência

Anália Lourenço

Pessoa

Publicações
Contato
Ver Todos

publicações selecionadas

artigo académico
- Reconstruction of the network of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections. Current Bioinformatics. 2016
- MorphoCol: A powerful tool for the clinical profiling of pathogenic bacteria 2012
- A systematic approach to the interrogation and sharing of standardised biofilm signatures 2012
- Stringent response of Escherichia coli: revisiting the bibliome using literature mining. Microbial Informatics and Experimentation. 2011
- Clickstream data warehousing for web crawlers profiling. Lecture Notes in Engineering and Computer Science. 2011
- Applying clickstream data mining to real-time Web crawler detection and containment using ClickTips platform. Studies in Classification, Data Analysis, and Knowledge Organization. 2007
- Using text mining techniques for classical music scores analysis 2007
artigo de conferência
- A health-related study from food online reviews. The case of gluten-free foods. AI Communications. 2021
- The activity of bioinformatics developers and users in Stack Overflow. AI Communications. 2021
- Application of agent-based modelling to simulate ribosome translation. Computational Methods in Applied Sciences. 2020
- Benchmarking biomedical text mining web servers at BioCreative V.5: the technical Interoperability and Performance of annotation Servers - TIPS track 2017
- Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks 2017
- The in vitro and the in silico power couple: facilitating the discovery of novel anti infective strategies based on antimicrobial peptides and quorum sensing inhibitors 2017
- Insights into Pseudomonas aeruginosa and Candida albicans consortia challenged by antimicrobials 2016
- Insights into Pseudomonas aeruginosa and Candida albicans interactions in ventilator-associated pneumonia: effect of combinational antimicrobial therapy 2016
- A novel search engine supporting specific drug queries and literature management. AI Communications. 2015
- Bringing named entity recognition on Drupal content management system. AI Communications. 2014
- Marky: a lightweight web tracking tool for document annotation. AI Communications. 2014
- Signature based credentials, an alternative method for validating student access in eLearning systems. Proceedings on the European Conference of E-Learning. 2013
- New insights on the roles of bacteria and protozoa in activated-sludge processes 2012
- Profiling of pathogenic bacteria by colony morphology ¿ identification of potential biofilm resistance and virulence determinants 2012
- Profiling of pathogenic bacteria by colony morphology – identification of potential biofilm resistance and virulence determinants 2012
- SAD_BaSe: a blood bank data analysis software 2012
- Clickstream data warehousing for web crawlers profiling. Lecture Notes in Engineering and Computer Science. 2011
- Testing extensive use of NER tools in article classification and a statistical approach for method interaction extraction in the protein-protein interaction literature 2010
- Combining syntactic and ontological knowledge to extract biologically relevant relations from scientific papers 2009
- Web crawler profiling and containment through navigation pattern mining 2009
- A framework for the development of biomedical text mining software tools. IEEE International Conference on Bioinformatics and Bioengineering. 2008
- A framework for the integrated analysis of metabolic and regulatory networks. IEEE International Conference on Bioinformatics and Bioengineering. 2008
- A tool for the automatic and manual annotation of biomedical documents 2008
- Network analysis of an integrated metabolic/regulatory model of Escherichia coli 2008
- The @Note biomedical text mining workbench 2008
- An Ontology-Based Approach To Systems Biology Literature Retrieval and Processing 2007
- Applying clickstream data mining to real-time Web crawler detection and containment using ClickTips platform. Studies in Classification, Data Analysis, and Knowledge Organization. 2007
- AQUA: um sistema de informação para análise e a validação de parâmetros de qualidade da água em Alqueva 2006
- Catching web crawlers in the act 2006
- Portuguese regional differences in the wine grapes mycoflora 2005
- Regional differences in the mycoflora of Portuguese wine grapes: a 3 year-study 2005
- Agent-based knowledge extraction services inside enterprise data warehousing systems environments 2001
- Specializing agents on data integration in a data warehousing system environment 2001
artigo de revista
- Spanish Corpora of tweets about COVID-19 vaccination for automatic stance detection. Information Processing & Management. 2023
- Targeted depletion of pks+ bacteria from a fecal microbiota using specific antibodies. mSystems. 2023
- Use social media knowledge for exploring the portuguese wine industry: following talks and perceptions?. Scientific Programming. 2022
- Boosting biomedical document classification through the use of domain entity recognizers and semantic ontologies for document representation: the case of gluten bibliome. Neurocomputing. 2022
- Optimism and pessimism analysis using deep learning on COVID-19 related Twitter conversations. Information Processing & Management. 2022
- Computational approach to the systematic prediction of glycolytic abilities: looking into human microbiota. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2021
- A framework to extract biomedical knowledge from gluten-related tweets: the case of dietary concerns in digital era. Artificial Intelligence in Medicine. 2021
- Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae. Briefings in Bioinformatics. 2021
- HaemoKBS: a knowledge-based system for real-time, continuous categorisation of adverse reactions in blood recipients. Neurocomputing. 2021
- Mining the sociome for Health Informatics: Analysis of therapeutic lifestyle adherence of diabetic patients in Twitter. Future Generation Computer Systems. 2020
- In silico and functional analyses of immunomodulatory peptides encrypted in the human gut metaproteome. Journal of Functional Foods. 2020
- Revisiting the metabolic capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a glycoside hydrolase perspective 2020
- Understanding the social evolution of the Java community in Stack Overflow: a 10-year study of developer interactions. Future Generation Computer Systems. 2020
- The extracellular proteins of Lactobacillus acidophilus DSM 20079T display anti-inflammatory effect in both in piglets, healthy human donors and Crohns Disease patients. Journal of Functional Foods. 2020
- Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. Journal of Cheminformatics. 2019
- Using Twitter to understand the human bowel disease community: exploratory analysis of key topics. Journal of Medical Internet Research. 2019
- Online visibility of software-related web sites: The case of biomedical text mining tools. Information Processing & Management. 2019
- In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota. Food Research International. 2019
- Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. Computers in Biology and Medicine. 2019
- Computational prediction of the bioactivity potential of proteomes based on expert knowledge. Journal of Biomedical Informatics. 2019
- DEWE: a novel tool for executing differential expression RNA-Seq workflows in biomedical research. Computers in Biology and Medicine. 2019
- In silico approach for unveiling the glycoside hydrolase activities in Faecalibacterium prausnitzii through a systematic and integrative large-scale analysis. Antibiotics. 2019
- BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results. Antibiotics. 2018
- The evolving role of information technology in haemovigilance systems. Journal of Healthcare Engineering. 2018
- Exploring anti-quorum sensing and anti-virulence based strategies to fight Candida albicans infections: an in silico approach. FEMS Yeast Research. 2018
- Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans. Antibiotics. 2018
- In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria. Antibiotics. 2017
- Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy. Antibiotics. 2017
- A network perspective on antimicrobial peptide combination therapies: The potential of colistin, polymyxin B and nisin. International Journal of Antimicrobial Agents. 2017
- Collaborative relation annotation and quality analysis in Markyt environment. Database. 2017
- Critical review on biofilm methods. Antibiotics. 2017
- Information retrieval and text mining technologies for chemistry. Chemical Reviews. 2017
- MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. Database. 2017
- P4P: a peptidome-based strain-level genome comparison web tool. Nucleic Acids Research. 2017
- Probiotics, gut microbiota and their influence on host health and disease. Molecular Nutrition & Food Research. 2017
- Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining. Antibiotics. 2017
- Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms. Antibiotics. 2017
- A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis. Antibiotics. 2016
- Improving phylogeny reconstruction at the strain level using peptidome datasets. PLoS Computational Biology. 2016
- Tackling probiotic and gut microbiota functionality through proteomics. E-Polymers. 2016
- FISHji: new ImageJ macros for the quantification of fluorescence in epifluorescence images. Antibiotics. 2016
- BIOMedical search engine framework: lightweight and customized implementation of domain-specific biomedical search engines. Computer Methods and Programs in Biomedicine. 2016
- High performance computing for three-dimensional agent-based molecular models. Journal of Molecular Graphics & Modelling. 2016
- From amino acid sequence to bioactivity: the biomedical potential of antitumor peptides. Protein Science. 2016
- Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Briefings in Bioinformatics. 2016
- Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database. 2016
- Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms. Foodborne Pathogens and Disease. 2016
- Reconstruction of the network of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections. Current Bioinformatics. 2016
- Single molecule simulation of diffusion and enzyme kinetics. ACS Applied Polymer Materials. 2016
- The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. Database. 2016
- MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. Journal of Biomedical Informatics. 2015
- Extraction of pharmacokinetic evidence of drug-drug interactions from the literature. Antibiotics. 2015
- Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects. Computer Methods and Programs in Biomedicine. 2015
- Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework. Biomed Research International. 2015
- Data quality in biofilm high-throughput routine analysis: Intralaboratory protocol adaptation and experiment reproducibility. Antibiotics. 2015
- Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. Computer Methods and Programs in Biomedicine. 2015
- Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties.. Briefings in Bioinformatics. 2015
- Minimum information about a biofilm experiment (MIABiE): Standards for reporting experiments and data on sessile microbial communities living at interfaces. Foodborne Pathogens and Disease. 2014
- An harmonised vocabulary for communicating and interchanging biofilms experimental results. Journal of Integrative Bioinformatics. 2014
- Web scraping technologies in an API world. Briefings in Bioinformatics. 2014
- A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry. Talanta. 2013
- Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. Pacific Symposium on Biocomputing. 2013
- New trends in peptide-based anti-biofilm strategies: a review of recent achievements and bioinformatic approaches. Antibiotics. 2012
- A rational framework for production decision making in blood establishments. Journal of Integrative Bioinformatics. 2012
- Applying a text mining framework to the extraction of numerical parameters from scientific literature in the biotechnology domain. ADCAIJ: Advances in Distributed Computing and Artificial Intelligence Journal. 2012
- Biofomics: A web platform for the systematic and standardized collection of high-throughput biofilm data. Antibiotics. 2012
- Computational approaches to standard-compliant biofilm data for reliable analysis and integration.. Journal of Integrative Bioinformatics. 2012
- Text mining for the biocuration workflow. Database. 2012
- A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinformatics. 2011
- A study of the short and long-term regulation of E. coli metabolic pathways. Journal of Integrative Bioinformatics. 2011
- Challenges in integrating Escherichia coli molecular biology data. Briefings in Bioinformatics. 2011
- Semantic annotation of biological concepts interplaying microbial cellular responses. BMC Bioinformatics. 2011
- Stringent response of escherichia coli: revisiting the bibliome using literature mining. Microbial Informatics and Experimentation. 2011
- BioDR: Semantic indexing networks for biomedical document retrieval. Expert Systems with Applications. 2010
- @Note: A workbench for Biomedical Text Mining. Journal of Biomedical Informatics. 2009
- Using text mining techniques for classical music scores analysis 2007
- Application of classification-tree models to characterize the mycobiota of grapes on the basis of origin. Revista Iberoamericana de Micologia. 2006
- Influence of the region of origin on the mycobiota of grapes with emphasis on Aspergillus and Penicillium species. Mycological Research. 2006
capítulo de livro
- Computational resources and strategies to construct single-molecule models of FISH. Methods in Molecular Biology. 2021
- Aquisição e análise de dados de biofilme em larga escala 2012
- Interpreting the Regulatory Interplay in E. coli Metabolic Pathways 2011
- Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. Computational Methods in Applied Sciences. 2009
- Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis 2009
documento
livro
poster de conferência