publicações selecionadas
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artigo de conferência
- Troppo - A Python Framework for the Reconstruction of Context-Specific Metabolic Models. AI Communications. 2019
- Metabolite integration pipeline for the improvement of human metabolic models. AI Communications. 2018
- Development of an integrated framework for minimal cut set enumeration in constraint-based models. AI Communications. 2016
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artigo de revista
- A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. PLoS Computational Biology. 2022
- Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells. Computers in Biology and Medicine. 2022
- Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses. Molecular Systems Biology. 2021
- CoBAMP: a Python framework for metabolic pathway analysis in constraint-based models. Bioinformatics. 2019
- Comparison of pathway analysis and constraint-based methods for cell factory design. BMC Bioinformatics. 2019
- A Model Integration Pipeline for the Improvement of Human Genome-Scale Metabolic Reconstructions. Journal of Integrative Bioinformatics. 2019
- Development of a Framework for Metabolic Pathway Analysis-Driven Strain Optimization Methods. Interdisciplinary Sciences-Computational Life Sciences. 2017
- A DREAM challenge to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer. JCO Clinical Cancer Informatics. 2017
- Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data. Lancet Oncology. 2017
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capítulo de livro
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documento