publicações selecionadas
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artigo académico
- BioISO: an objective-oriented application for assisting the curation of genome-scale metabolic models. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2024
- Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. Journal of Integrative Bioinformatics. 2022
- merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models. Nucleic Acids Research. 2022
- merlin v4.0: an updated platform for the reconstruction of high-quality genome-scale metabolic models. Nucleic Acid Research. 2021
- A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. BMC Bioinformatics. 2021
- A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. BMC Bioinformatics. 2021
- A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation. Biochemical SocIETy Transactions. 2020
- SamPler - a novel method for selecting parameters for gene functional annotation routines. BMC Bioinformatics. 2019
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artigo de conferência
- Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis. Advances in Intelligent Systems and Computing. 2020
- merlin v4: an updated platform for reconstructing genome-scale metabolic models 2020
- Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression. Advances in Intelligent Systems and Computing. 2019
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capítulo de livro
- Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. Lecture Notes in Networks and Systems. 2022
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documento
- Blueprint: documenting the complexity of metabolic regulation by reconstruction of integrated metabolic-regulatory models 2023
- merlin v4. 0: an updated platform for the reconstruction of high-quality genome-scale metabolic models 2021
- merlin v4: an updated platform for reconstructing genome-scale metabolic models 2020
- Genome-Scale Metabolic Network Reconstruction of the dairy bacterium Streptococcus thermophilus 2017