publicações selecionadas
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artigo académico
- A diel multi-tissue genome-scale metabolic model of Vitis vinifera. PLoS Computational Biology. 2024
- Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. Journal of Integrative Bioinformatics. 2022
- Exploring synergies between plant metabolic modelling and machine learning. Computational and Structural Biotechnology Journal. 2022
- Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli. BMC Genomics. 2021
- PhageSuite - phage processing tools. Bioinformatics. 2019
- PhageSuite - phage processing tools. Bioinformatics. 2019
- Staphylococci phages display vast genomic diversity and evolutionary relationships. BMC Genomics. 2019
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artigo de conferência
- A multi-omics approach for understanding grape metabolism throughout development. IFAC-PapersOnLine. 2024
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capítulo de livro
- Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. Lecture Notes in Networks and Systems. 2022
- Predicting Promoters in Phage Genomes Using Machine Learning Models. Advances in Intelligent Systems and Computing. 2019
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documento
- diel_models: a python package for systematic integration of daynight cycles into plant genome-scale metabolic models. Bioinformatics Advances. 2025
- M3L: exploring synergies between metabolic modelling and machine learning for studying plants 2024
- Understanding the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli 2021
- Endolysin binding domain is highly conserved in staphylococcal phage genomes 2018
- PhagePromoter: phage promoters online analysis tool 2018
- A diel multi-tissue genome-scale metabolic model ofVitis vinifera