publicações selecionadas
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artigo académico
- Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction. BMC Bioinformatics. 2025
- Deepmol: an automated machine and deep learning framework for computational chemistry. Journal of Cheminformatics. 2024
- BioISO: an objective-oriented application for assisting the curation of genome-scale metabolic models. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2024
- Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. Journal of Integrative Bioinformatics. 2022
- merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models. Nucleic Acids Research. 2022
- merlin v4.0: an updated platform for the reconstruction of high-quality genome-scale metabolic models. Nucleic Acid Research. 2021
- A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. BMC Bioinformatics. 2021
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artigo de conferência
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capítulo de livro
- Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. Lecture Notes in Networks and Systems. 2022
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documento
- diel_models: a python package for systematic integration of daynight cycles into plant genome-scale metabolic models. Bioinformatics Advances. 2025
- Development of deep learning approaches to predict relationships between chemical structures and sweetness. IEEE International Joint Conference on Neural Networks (IJCNN). 2022
- Revising lipid chemical structures in genome-wide metabolic models with BOIMMG 2021
- merlin v4. 0: an updated platform for the reconstruction of high-quality genome-scale metabolic models 2021
- merlin v4: an updated platform for reconstructing genome-scale metabolic models 2020
- Predicting precursors of plant specialized metabolites using DeepMol automated machine learning